Using this software0. For impatient users
1. Data inputs
2. Create a project
3. Annotate a project
Using user annotation track
4. Filter for quality scores
5. Main user interface
6. SVA genome browser
7. SVA tables
8. Selecting genes or regions
Bio-pathway or GO
Fisher's exact test
10. Exome or targeted capture sequencing
Selecting genes by OMIM disorders
SVA allows selecting genes by OMIM disorders.
To access this function, click on menu "Filter -> Gene filter - OMIM ", or click on button "OMIM disorders ".
You will see a dialog like this:
You have three ways to select genes:
If you would like to remove all the selected items, click on button "<<Deselect all".
After you select the genes, click on button "FILTER". This process will first select all the genes associated with the selected OMIM disorders, then select all the variants related to the selected genes, by the functional categories defined here.
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© 2011 Dongliang Ge, PhD.