A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

A

A - Static variable in class genomicsnpanalyzer.Worker
 
AAs - Variable in class nsanalyzer.MappResult
 
accessionNum - Variable in class genomicsnpanalyzer.entry.HGNCEntry
 
act(ClosableTabbedPane, int) - Method in interface genomicsnpanalyzer.gui.CloseTabAction
 
act(ClosableTabbedPane, int) - Method in interface genomicsnpanalyzer.gui.SelectTabAction
 
actionPerformed(ActionEvent) - Method in class genomicsnpanalyzer.Dialog_sample
 
actionPerformed(ActionEvent) - Method in class genomicsnpanalyzer.gui.DensityOverviewPane
 
actionPerformed(ActionEvent) - Method in class genomicsnpanalyzer.gui.Dialog_analysis_prio_gene
 
actionPerformed(ActionEvent) - Method in class genomicsnpanalyzer.gui.Dialog_analysis_prio_var
 
actionPerformed(ActionEvent) - Method in class genomicsnpanalyzer.gui.Dialog_analysis_rareDom
 
actionPerformed(ActionEvent) - Method in class genomicsnpanalyzer.gui.Dialog_analysis_variantPosition
 
actionPerformed(ActionEvent) - Method in class genomicsnpanalyzer.gui.Dialog_buildBinCoverage
 
actionPerformed(ActionEvent) - Method in class genomicsnpanalyzer.gui.Dialog_buildBinRef
 
actionPerformed(ActionEvent) - Method in class genomicsnpanalyzer.gui.Dialog_checkSNP1M
 
actionPerformed(ActionEvent) - Method in class genomicsnpanalyzer.gui.Dialog_checkSVrawcnv
 
actionPerformed(ActionEvent) - Method in class genomicsnpanalyzer.gui.Dialog_comparePrjSNPs
 
actionPerformed(ActionEvent) - Method in class genomicsnpanalyzer.gui.Dialog_createChrWisePrj
 
actionPerformed(ActionEvent) - Method in class genomicsnpanalyzer.gui.Dialog_createInputSubset
 
actionPerformed(ActionEvent) - Method in class genomicsnpanalyzer.gui.Dialog_ExtractSubjects
 
actionPerformed(ActionEvent) - Method in class genomicsnpanalyzer.gui.Dialog_FilterHapmapFreq
 
actionPerformed(ActionEvent) - Method in class genomicsnpanalyzer.gui.Dialog_FilterRegion
 
actionPerformed(ActionEvent) - Method in class genomicsnpanalyzer.gui.Dialog_FilterSubject
 
actionPerformed(ActionEvent) - Method in class genomicsnpanalyzer.gui.Dialog_GBdisplayItem
 
actionPerformed(ActionEvent) - Method in class genomicsnpanalyzer.gui.Dialog_geneBiotypeFilter
 
actionPerformed(ActionEvent) - Method in class genomicsnpanalyzer.gui.Dialog_geneFilter
 
actionPerformed(ActionEvent) - Method in class genomicsnpanalyzer.gui.Dialog_GenomeBrowserShowDGVCNV
 
actionPerformed(ActionEvent) - Method in class genomicsnpanalyzer.gui.Dialog_GenomeBrowserShowIndels
 
actionPerformed(ActionEvent) - Method in class genomicsnpanalyzer.gui.Dialog_GenomeBrowserShowIndIndel
 
actionPerformed(ActionEvent) - Method in class genomicsnpanalyzer.gui.Dialog_GenomeBrowserShowIndSNP
 
actionPerformed(ActionEvent) - Method in class genomicsnpanalyzer.gui.Dialog_GenomeBrowserShowIndSV
 
actionPerformed(ActionEvent) - Method in class genomicsnpanalyzer.gui.Dialog_GenomeBrowserShowOneKSNP
 
actionPerformed(ActionEvent) - Method in class genomicsnpanalyzer.gui.Dialog_GenomeBrowserShowSimpleSNPs
 
actionPerformed(ActionEvent) - Method in class genomicsnpanalyzer.gui.Dialog_GenomeBrowserShowSNPs
 
actionPerformed(ActionEvent) - Method in class genomicsnpanalyzer.gui.Dialog_GenomeBrowserShowSVs
 
actionPerformed(ActionEvent) - Method in class genomicsnpanalyzer.gui.Dialog_GenomeBrowserShowTaggedCNV
 
actionPerformed(ActionEvent) - Method in class genomicsnpanalyzer.gui.Dialog_GenomeBrowserShowTrans
 
actionPerformed(ActionEvent) - Method in class genomicsnpanalyzer.gui.Dialog_GenomeBrowserShowVarFeatures
 
actionPerformed(ActionEvent) - Method in class genomicsnpanalyzer.gui.Dialog_GenomeBrowserShowVenterIndels
 
actionPerformed(ActionEvent) - Method in class genomicsnpanalyzer.gui.Dialog_GenomeBrowserShowVenterSNPs
 
actionPerformed(ActionEvent) - Method in class genomicsnpanalyzer.gui.Dialog_goFilter
 
actionPerformed(ActionEvent) - Method in class genomicsnpanalyzer.gui.Dialog_IndelQualityFilter
 
actionPerformed(ActionEvent) - Method in class genomicsnpanalyzer.gui.Dialog_keywordsearch
 
actionPerformed(ActionEvent) - Method in class genomicsnpanalyzer.gui.Dialog_list_het
 
actionPerformed(ActionEvent) - Method in class genomicsnpanalyzer.gui.Dialog_list_hom
 
actionPerformed(ActionEvent) - Method in class genomicsnpanalyzer.gui.Dialog_list_homhet
 
actionPerformed(ActionEvent) - Method in class genomicsnpanalyzer.gui.Dialog_omimDisorder
 
actionPerformed(ActionEvent) - Method in class genomicsnpanalyzer.gui.Dialog_openProject
 
actionPerformed(ActionEvent) - Method in class genomicsnpanalyzer.gui.Dialog_OptionFunctionDisplay
 
actionPerformed(ActionEvent) - Method in class genomicsnpanalyzer.gui.Dialog_OptionGenomeBrowser
 
actionPerformed(ActionEvent) - Method in class genomicsnpanalyzer.gui.Dialog_OptionMemory
 
actionPerformed(ActionEvent) - Method in class genomicsnpanalyzer.gui.Dialog_OptionThreadsAnnotation
 
actionPerformed(ActionEvent) - Method in class genomicsnpanalyzer.gui.Dialog_outputRegionCov
 
actionPerformed(ActionEvent) - Method in class genomicsnpanalyzer.gui.Dialog_pathwayFilter
 
actionPerformed(ActionEvent) - Method in class genomicsnpanalyzer.gui.Dialog_searchGene
 
actionPerformed(ActionEvent) - Method in class genomicsnpanalyzer.gui.Dialog_searchSNP
 
actionPerformed(ActionEvent) - Method in class genomicsnpanalyzer.gui.Dialog_selectIndelTableHeaders
 
actionPerformed(ActionEvent) - Method in class genomicsnpanalyzer.gui.Dialog_selectSNPTableHeaders
 
actionPerformed(ActionEvent) - Method in class genomicsnpanalyzer.gui.Dialog_showIndelSubjectDetails
 
actionPerformed(ActionEvent) - Method in class genomicsnpanalyzer.gui.Dialog_showSNPSubjectDetails
 
actionPerformed(ActionEvent) - Method in class genomicsnpanalyzer.gui.Dialog_showSVSubjectDetails
 
actionPerformed(ActionEvent) - Method in class genomicsnpanalyzer.gui.Dialog_SNPQualityFilter
 
actionPerformed(ActionEvent) - Method in class genomicsnpanalyzer.gui.Dialog_summary_indelsFun
 
actionPerformed(ActionEvent) - Method in class genomicsnpanalyzer.gui.Dialog_summary_snpsFunMaf
 
actionPerformed(ActionEvent) - Method in class genomicsnpanalyzer.gui.Dialog_summaryCoverageRegions
 
actionPerformed(ActionEvent) - Method in class genomicsnpanalyzer.gui.Dialog_SVQualityFilter
 
actionPerformed(ActionEvent) - Method in class genomicsnpanalyzer.gui.FilterSummaryPane
 
actionPerformed(ActionEvent) - Method in class genomicsnpanalyzer.gui.GenomeBrowserPane
 
actionPerformed(ActionEvent) - Method in class genomicsnpanalyzer.gui.IndelListTablePane
 
actionPerformed(ActionEvent) - Method in class genomicsnpanalyzer.gui.IndelTable
 
actionPerformed(ActionEvent) - Method in class genomicsnpanalyzer.gui.MainContentPane
 
actionPerformed(ActionEvent) - Method in class genomicsnpanalyzer.gui.MainLowerToolbar
 
actionPerformed(ActionEvent) - Method in class genomicsnpanalyzer.gui.MainUpperToolbar
 
actionPerformed(ActionEvent) - Method in class genomicsnpanalyzer.gui.SNPListTablePane
 
actionPerformed(ActionEvent) - Method in class genomicsnpanalyzer.gui.SNPTable
 
actionPerformed(ActionEvent) - Method in class genomicsnpanalyzer.gui.SVListTablePane
 
actionPerformed(ActionEvent) - Method in class genomicsnpanalyzer.gui.SVTable
 
actionPerformed(ActionEvent) - Method in class genomicsnpanalyzer.gui.WindowNote
 
actionPerformed(ActionEvent) - Method in class genomicsnpanalyzer.gui.WindowSequence
 
actionPerformed(ActionEvent) - Method in class genomicsnpanalyzer.Main
 
addDensityTabPane() - Method in class genomicsnpanalyzer.gui.MainContentPane
 
addFilterTabPane() - Method in class genomicsnpanalyzer.gui.MainContentPane
 
addGenomeBrowserTabPane() - Method in class genomicsnpanalyzer.gui.MainContentPane
 
addIndelTabPane() - Method in class genomicsnpanalyzer.gui.MainContentPane
 
addLogPane() - Method in class genomicsnpanalyzer.gui.MainContentPane
 
addProjectPane() - Method in class genomicsnpanalyzer.gui.MainContentPane
 
addSNPListTabPane() - Method in class genomicsnpanalyzer.gui.MainContentPane
 
addSummaryPane() - Method in class genomicsnpanalyzer.gui.MainContentPane
 
addSummaryPane_indel() - Method in class genomicsnpanalyzer.gui.MainContentPane
 
addSummaryPane_indel_nonrs() - Method in class genomicsnpanalyzer.gui.MainContentPane
 
addSummaryPane_indel_rs() - Method in class genomicsnpanalyzer.gui.MainContentPane
 
addSummaryPane_nonrs() - Method in class genomicsnpanalyzer.gui.MainContentPane
 
addSummaryPane_rs() - Method in class genomicsnpanalyzer.gui.MainContentPane
 
addSVTabPane() - Method in class genomicsnpanalyzer.gui.MainContentPane
 
AExon - Class in genomicsnpanalyzer.genomebrowser.entry
 
AExon() - Constructor for class genomicsnpanalyzer.genomebrowser.entry.AExon
Creates a new instance of AExon
AGene - Class in genomicsnpanalyzer.genomebrowser.entry
 
AGene() - Constructor for class genomicsnpanalyzer.genomebrowser.entry.AGene
Creates a new instance of Gene
alias - Variable in class genomicsnpanalyzer.entry.HGNCEntry
 
allele - Variable in class genomicsnpanalyzer.entry.LociFunction
 
allele - Variable in class genomicsnpanalyzer.entry.OneKHumGenomeLoci
 
allele - Variable in class genomicsnpanalyzer.entry.VenterIndel
 
allele - Variable in class genomicsnpanalyzer.entry.VenterSNP
 
allele - Variable in class genomicsnpanalyzer.genomebrowser.entry.SortableLociFunction
 
allele - Variable in class genomicsnpanalyzer.genomebrowser.entry.SortableOneKHumGenomeLoci
 
alleleCount - Variable in class genomicsnpanalyzer.entry.OneKHumGenomeLoci
 
alleleCount - Variable in class genomicsnpanalyzer.genomebrowser.entry.SortableOneKHumGenomeLoci
 
alleles - Variable in class genomicsnpanalyzer.entry.VarFeature
 
alleles - Variable in class genomicsnpanalyzer.genomebrowser.entry.SortableVarFeature
 
ambiguousAllele - Variable in class genomicsnpanalyzer.entry.LociFunctionSubjectInf
 
ambiguousAllele - Variable in class genomicsnpanalyzer.entry.SortableLociFunctionSubjectInf
 
AmbiguousBase(String) - Static method in class genomicsnpanalyzer.Worker
 
AmbiguousByteBaseToStr(byte) - Static method in class genomicsnpanalyzer.Worker
 
AmbiguousStrBaseToByte(String) - Static method in class genomicsnpanalyzer.Worker
 
ancestralAllele - Variable in class genomicsnpanalyzer.genomebrowser.entry.ASNP
 
AnnoatedChrom_transFinalH - Variable in class genomicsnpanalyzer.Components
 
AnnotatedChrom_bm - Variable in class genomicsnpanalyzer.Components
 
AnnotatedChrom_generalInterval - Variable in class genomicsnpanalyzer.Components
 
AnnotatedChrom_generalIntervalSmall - Variable in class genomicsnpanalyzer.Components
 
AnnotatedChrom_hCNV - Variable in class genomicsnpanalyzer.Components
 
AnnotatedChrom_hTrans - Variable in class genomicsnpanalyzer.Components
 
AnnotatedChrom_intervalCNV - Variable in class genomicsnpanalyzer.Components
 
AnnotatedChrom_intervalTrans - Variable in class genomicsnpanalyzer.Components
 
AnnotatedChrom_lm - Variable in class genomicsnpanalyzer.Components
 
AnnotatedChrom_plotChrlm - Variable in class genomicsnpanalyzer.Components
 
AnnotatedChrom_plotChry - Variable in class genomicsnpanalyzer.Components
 
AnnotatedChrom_plotw - Variable in class genomicsnpanalyzer.Components
 
AnnotatedChrom_rm - Variable in class genomicsnpanalyzer.Components
 
AnnotatedChrom_tm - Variable in class genomicsnpanalyzer.Components
 
AnnotatedChrom_totallm - Variable in class genomicsnpanalyzer.Components
 
AnnotatedChromRegionIndicatorH - Variable in class genomicsnpanalyzer.Components
 
annotationFileDesc - Static variable in class genomicsnpanalyzer.entry.Project
 
annotationFileNumber - Static variable in class genomicsnpanalyzer.entry.Project
 
append(Color, String) - Method in class genomicsnpanalyzer.gui.ColorTextPane
 
append(Color, String, String) - Method in class genomicsnpanalyzer.gui.ColorTextPane
 
append(String) - Method in class genomicsnpanalyzer.gui.ColorTextPane
 
appendline(String) - Method in class genomicsnpanalyzer.gui.ColorTextPane
 
appendURL(String) - Method in class genomicsnpanalyzer.gui.ColorTextPane
 
AppTitle - Variable in class genomicsnpanalyzer.Main
 
ASNP - Class in genomicsnpanalyzer.genomebrowser.entry
 
ASNP() - Constructor for class genomicsnpanalyzer.genomebrowser.entry.ASNP
Creates a new instance of ASNP
ATranscript - Class in genomicsnpanalyzer.genomebrowser.entry
 
ATranscript() - Constructor for class genomicsnpanalyzer.genomebrowser.entry.ATranscript
Creates a new instance of ATranscript
avgfscore1 - Variable in class genomicsnpanalyzer.entry.LociFunction
 
avgfscore1 - Variable in class genomicsnpanalyzer.genomebrowser.entry.SortableLociFunction
 
avgfscore2 - Variable in class genomicsnpanalyzer.entry.LociFunction
 
avgfscore2 - Variable in class genomicsnpanalyzer.genomebrowser.entry.SortableLociFunction
 
avgfscore3 - Variable in class genomicsnpanalyzer.entry.LociFunction
 
avgfscore3 - Variable in class genomicsnpanalyzer.genomebrowser.entry.SortableLociFunction
 
avgfscore4 - Variable in class genomicsnpanalyzer.entry.LociFunction
 
avgfscore4 - Variable in class genomicsnpanalyzer.genomebrowser.entry.SortableLociFunction
 
avgfscore5 - Variable in class genomicsnpanalyzer.entry.LociFunction
 
avgfscore5 - Variable in class genomicsnpanalyzer.genomebrowser.entry.SortableLociFunction
 
avgfscore6 - Variable in class genomicsnpanalyzer.entry.LociFunction
 
avgfscore6 - Variable in class genomicsnpanalyzer.genomebrowser.entry.SortableLociFunction
 
avgScore1HistogramImg - Variable in class genomicsnpanalyzer.CacheDataCenter
 
avgScore2HistogramImg - Variable in class genomicsnpanalyzer.CacheDataCenter
 
avgScore3HistogramImg - Variable in class genomicsnpanalyzer.CacheDataCenter
 
avgScore4HistogramImg - Variable in class genomicsnpanalyzer.CacheDataCenter
 
avgScore5HistogramImg - Variable in class genomicsnpanalyzer.CacheDataCenter
 
avgScore6HistogramImg - Variable in class genomicsnpanalyzer.CacheDataCenter
 

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