genomicsnpanalyzer.gui
Class SNPListTablePane

java.lang.Object
  java.awt.Component
      java.awt.Container
          javax.swing.JComponent
              javax.swing.JPanel
                  genomicsnpanalyzer.gui.SNPListTablePane

All Implemented Interfaces:

java.awt.event.ActionListener, java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, java.util.EventListener, javax.accessibility.Accessible

public class SNPListTablePane
extends javax.swing.JPanel
implements java.awt.event.ActionListener

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class javax.swing.JPanel

javax.swing.JPanel.AccessibleJPanel

Nested classes/interfaces inherited from class javax.swing.JComponent

javax.swing.JComponent.AccessibleJComponent

Nested classes/interfaces inherited from class java.awt.Container

java.awt.Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

java.awt.Component.AccessibleAWTComponent, java.awt.Component.BaselineResizeBehavior, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

javax.swing.JComboBox	functionCombo
javax.swing.JLabel	selectedCountLabel
javax.swing.JLabel	selectedFunctionMethodLabel
javax.swing.JLabel	selectedGeneMethodLabel
java.util.ArrayList	selectedIndex
javax.swing.JLabel	selectedQualityLabel
javax.swing.JLabel	selectHapmapFreqLabel
javax.swing.JLabel	selectHomLabel
javax.swing.JLabel	selectNSIntolerantLabel
javax.swing.JLabel	selectRefLabel
javax.swing.JLabel	selectRmrLabel
javax.swing.JLabel	selectSubjectLabel
javax.swing.JLabel	totalCountLabel

Fields inherited from class javax.swing.JComponent

accessibleContext, listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

SNPListTablePane(Main Parent)

Method Summary

void	actionPerformed(java.awt.event.ActionEvent e)
void	FilterRegions()
void	FilterSNPsbyNSIntolerance()
void	HandleFilterRegionMenu()
void	HandleGeneBiotypeFilter()
void	HandleGeneFilter()
void	HandleGOFilter()
void	HandleHapmapFreqFilterButton()
void	HandleHomFilter()
void	HandleHomFilterButton()
void	HandleNonrmrOnlyFilter()
void	HandleNovelSNPOnlyFilter()
void	HandleNSTolerantFilter()
void	HandleNSTolerantFilterButton()
void	HandleOmimDisorderFilter()
void	HandleOmimGeneFilter()
void	HandlePathwayFilter()
void	HandleQualityFilter()
void	HandleRefFilterButton()
void	HandleRefSNPOnlyFilter()
void	HandleRmrFilterButton()
void	HandleRmrOnlyFilter()
void	handleSelectColumns()
void	HandleSubjectFilter()
void	resetFunctionFilter()
void	resetLabels()
void	resetTable()
void	SaveList()
void	SaveListSubDetailsToFile(java.io.File csvFile)
void	SaveListSubDetailsToFile(java.io.File csvFile, boolean chrSeparate)
void	SaveListToFile(java.io.File csvFile)
void	SaveListToFile(java.io.File csvFile, boolean chrSeparate)
void	updateIndexCombo()
void	updateTable()

Methods inherited from class javax.swing.JPanel

getAccessibleContext, getUI, getUIClassID, paramString, setUI, updateUI

Methods inherited from class javax.swing.JComponent

addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBaseline, getBaselineResizeBehavior, getBorder, getBounds, getClientProperty, getComponentGraphics, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPopupLocation, getPreferredSize, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingForPrint, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paint, paintBorder, paintChildren, paintComponent, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFocusTraversalKeys, setFont, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, update

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addImpl, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusBackward, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, hide, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

functionCombo

public javax.swing.JComboBox functionCombo

selectedIndex

public java.util.ArrayList selectedIndex

totalCountLabel

public javax.swing.JLabel totalCountLabel

selectedCountLabel

public javax.swing.JLabel selectedCountLabel

selectedFunctionMethodLabel

public javax.swing.JLabel selectedFunctionMethodLabel

selectedGeneMethodLabel

public javax.swing.JLabel selectedGeneMethodLabel

selectedQualityLabel

public javax.swing.JLabel selectedQualityLabel

selectNSIntolerantLabel

public javax.swing.JLabel selectNSIntolerantLabel

selectHomLabel

public javax.swing.JLabel selectHomLabel

selectRefLabel

public javax.swing.JLabel selectRefLabel

selectRmrLabel

public javax.swing.JLabel selectRmrLabel

selectSubjectLabel

public javax.swing.JLabel selectSubjectLabel

selectHapmapFreqLabel

public javax.swing.JLabel selectHapmapFreqLabel

Constructor Detail

SNPListTablePane

public SNPListTablePane(Main Parent)

Method Detail

actionPerformed

public void actionPerformed(java.awt.event.ActionEvent e)

Specified by:

actionPerformed in interface java.awt.event.ActionListener

handleSelectColumns

public void handleSelectColumns()

SaveList

public void SaveList()

SaveListToFile

public void SaveListToFile(java.io.File csvFile)

SaveListToFile

public void SaveListToFile(java.io.File csvFile,
                           boolean chrSeparate)

SaveListSubDetailsToFile

public void SaveListSubDetailsToFile(java.io.File csvFile)

SaveListSubDetailsToFile

public void SaveListSubDetailsToFile(java.io.File csvFile,
                                     boolean chrSeparate)

HandlePathwayFilter

public void HandlePathwayFilter()

HandleGeneFilter

public void HandleGeneFilter()

HandleGeneBiotypeFilter

public void HandleGeneBiotypeFilter()

HandleGOFilter

public void HandleGOFilter()

HandleOmimGeneFilter

public void HandleOmimGeneFilter()

HandleOmimDisorderFilter

public void HandleOmimDisorderFilter()

HandleSubjectFilter

public void HandleSubjectFilter()

HandleFilterRegionMenu

public void HandleFilterRegionMenu()

FilterRegions

public void FilterRegions()

HandleNSTolerantFilterButton

public void HandleNSTolerantFilterButton()

HandleNSTolerantFilter

public void HandleNSTolerantFilter()

HandleHomFilterButton

public void HandleHomFilterButton()

HandleHomFilter

public void HandleHomFilter()

HandleRefFilterButton

public void HandleRefFilterButton()

HandleRefSNPOnlyFilter

public void HandleRefSNPOnlyFilter()

HandleNovelSNPOnlyFilter

public void HandleNovelSNPOnlyFilter()

HandleRmrFilterButton

public void HandleRmrFilterButton()

HandleHapmapFreqFilterButton

public void HandleHapmapFreqFilterButton()

HandleRmrOnlyFilter

public void HandleRmrOnlyFilter()

HandleNonrmrOnlyFilter

public void HandleNonrmrOnlyFilter()

HandleQualityFilter

public void HandleQualityFilter()

FilterSNPsbyNSIntolerance

public void FilterSNPsbyNSIntolerance()

updateIndexCombo

public void updateIndexCombo()

resetLabels

public void resetLabels()

resetFunctionFilter

public void resetFunctionFilter()

resetTable

public void resetTable()

updateTable

public void updateTable()