genomicsnpanalyzer.gui
Class ChrRgnImg

java.lang.Object
  extended by genomicsnpanalyzer.gui.ChrRgnImg

public class ChrRgnImg
extends java.lang.Object


Constructor Summary
ChrRgnImg(java.lang.String chrfolder)
          Creates a new instance of chrRgnImg
 
Method Summary
 double[] getChrLength()
           
 java.lang.String[] getChromosome()
           
 java.awt.image.BufferedImage getChrRegionImage(java.lang.String chr, double start, double end)
           
 double getCurrentChromosomeLength()
           
 int getHighlightEndCoord()
           
 int getHighlightStartCoord()
           
 int getImageHeight()
           
 int getImageWidth()
           
 int getLeftCoord()
           
 int getRightCoord()
           
 void UpdateAndWriteRefSeqNImage(java.lang.String chr, java.util.ArrayList nStarts, java.util.ArrayList nEnds)
           
 void WriteAndUpdateMaxChrLength(long[] newChrLength)
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

ChrRgnImg

public ChrRgnImg(java.lang.String chrfolder)
Creates a new instance of chrRgnImg

Method Detail

getChrLength

public double[] getChrLength()

getCurrentChromosomeLength

public double getCurrentChromosomeLength()

getChromosome

public java.lang.String[] getChromosome()

getChrRegionImage

public java.awt.image.BufferedImage getChrRegionImage(java.lang.String chr,
                                                      double start,
                                                      double end)

getHighlightStartCoord

public int getHighlightStartCoord()

getHighlightEndCoord

public int getHighlightEndCoord()

getLeftCoord

public int getLeftCoord()

getRightCoord

public int getRightCoord()

getImageWidth

public int getImageWidth()

getImageHeight

public int getImageHeight()

WriteAndUpdateMaxChrLength

public void WriteAndUpdateMaxChrLength(long[] newChrLength)

UpdateAndWriteRefSeqNImage

public void UpdateAndWriteRefSeqNImage(java.lang.String chr,
                                       java.util.ArrayList nStarts,
                                       java.util.ArrayList nEnds)