genomicsnpanalyzer.gui
Class ChrRgnImg

java.lang.Object
  genomicsnpanalyzer.gui.ChrRgnImg

public class ChrRgnImg
extends java.lang.Object

Constructor Summary

ChrRgnImg(java.lang.String chrfolder)
Creates a new instance of chrRgnImg

Method Summary

double[]	getChrLength()
java.lang.String[]	getChromosome()
java.awt.image.BufferedImage	getChrRegionImage(java.lang.String chr, double start, double end)
double	getCurrentChromosomeLength()
int	getHighlightEndCoord()
int	getHighlightStartCoord()
int	getImageHeight()
int	getImageWidth()
int	getLeftCoord()
int	getRightCoord()
void	UpdateAndWriteRefSeqNImage(java.lang.String chr, java.util.ArrayList nStarts, java.util.ArrayList nEnds)
void	WriteAndUpdateMaxChrLength(long[] newChrLength)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ChrRgnImg

public ChrRgnImg(java.lang.String chrfolder)

Creates a new instance of chrRgnImg

Method Detail

getChrLength

public double[] getChrLength()

getCurrentChromosomeLength

public double getCurrentChromosomeLength()

getChromosome

public java.lang.String[] getChromosome()

getChrRegionImage

public java.awt.image.BufferedImage getChrRegionImage(java.lang.String chr,
                                                      double start,
                                                      double end)

getHighlightStartCoord

public int getHighlightStartCoord()

getHighlightEndCoord

public int getHighlightEndCoord()

getLeftCoord

public int getLeftCoord()

getRightCoord

public int getRightCoord()

getImageWidth

public int getImageWidth()

getImageHeight

public int getImageHeight()

WriteAndUpdateMaxChrLength

public void WriteAndUpdateMaxChrLength(long[] newChrLength)

UpdateAndWriteRefSeqNImage

public void UpdateAndWriteRefSeqNImage(java.lang.String chr,
                                       java.util.ArrayList nStarts,
                                       java.util.ArrayList nEnds)