genomicsnpanalyzer.entry
Class Transcript

java.lang.Object
  genomicsnpanalyzer.entry.Transcript

All Implemented Interfaces:

java.io.Serializable

public class Transcript
extends java.lang.Object
implements java.io.Serializable

See Also:

Serialized Form

Field Summary

byte	bytechr
byte[]	cds
int[]	cdscoor
int[]	cdscoorHeader
byte[]	cdsHeader
java.util.ArrayList	exons
int	geneID
int	geneIdx
boolean	isCanonical
int	seqRegionEnd
int	seqRegionID
int	seqRegionStart
java.lang.String	stableID
byte	strand
int	transcriptID
Translation	translation
int	translationID
UTR	utr3
UTR	utr5

Constructor Summary

Transcript()
Creates a new instance of Transcript

Method Summary

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

bytechr

public byte bytechr

stableID

public java.lang.String stableID

transcriptID

public int transcriptID

translationID

public int translationID

geneID

public int geneID

geneIdx

public int geneIdx

strand

public byte strand

seqRegionID

public int seqRegionID

seqRegionStart

public int seqRegionStart

seqRegionEnd

public int seqRegionEnd

utr5

public UTR utr5

utr3

public UTR utr3

translation

public Translation translation

exons

public java.util.ArrayList exons

cds

public byte[] cds

cdscoor

public int[] cdscoor

cdsHeader

public byte[] cdsHeader

cdscoorHeader

public int[] cdscoorHeader

isCanonical

public boolean isCanonical

Constructor Detail

Transcript

public Transcript()

Creates a new instance of Transcript