genomicsnpanalyzer.entry
Class Transcript

java.lang.Object
  extended by genomicsnpanalyzer.entry.Transcript
All Implemented Interfaces:
java.io.Serializable

public class Transcript
extends java.lang.Object
implements java.io.Serializable

See Also:
Serialized Form

Field Summary
 byte bytechr
           
 byte[] cds
           
 int[] cdscoor
           
 int[] cdscoorHeader
           
 byte[] cdsHeader
           
 java.util.ArrayList exons
           
 int geneID
           
 int geneIdx
           
 boolean isCanonical
           
 int seqRegionEnd
           
 int seqRegionID
           
 int seqRegionStart
           
 java.lang.String stableID
           
 byte strand
           
 int transcriptID
           
 Translation translation
           
 int translationID
           
 UTR utr3
           
 UTR utr5
           
 
Constructor Summary
Transcript()
          Creates a new instance of Transcript
 
Method Summary
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Field Detail

bytechr

public byte bytechr

stableID

public java.lang.String stableID

transcriptID

public int transcriptID

translationID

public int translationID

geneID

public int geneID

geneIdx

public int geneIdx

strand

public byte strand

seqRegionID

public int seqRegionID

seqRegionStart

public int seqRegionStart

seqRegionEnd

public int seqRegionEnd

utr5

public UTR utr5

utr3

public UTR utr3

translation

public Translation translation

exons

public java.util.ArrayList exons

cds

public byte[] cds

cdscoor

public int[] cdscoor

cdsHeader

public byte[] cdsHeader

cdscoorHeader

public int[] cdscoorHeader

isCanonical

public boolean isCanonical
Constructor Detail

Transcript

public Transcript()
Creates a new instance of Transcript