genomicsnpanalyzer
Class SNPQualityFilter

java.lang.Object
  genomicsnpanalyzer.SNPQualityFilter

public class SNPQualityFilter
extends java.lang.Object

Field Summary

boolean	score1BetweenSelected
double	score1BetweenValue1
double	score1BetweenValue2
boolean	score1GreaterSelected
double	score1GreaterValue
boolean	score1LessSelected
double	score1LessValue
boolean	score2BetweenSelected
double	score2BetweenValue1
double	score2BetweenValue2
boolean	score2GreaterSelected
double	score2GreaterValue
boolean	score2LessSelected
double	score2LessValue
boolean	score3BetweenSelected
double	score3BetweenValue1
double	score3BetweenValue2
boolean	score3GreaterSelected
double	score3GreaterValue
boolean	score3LessSelected
double	score3LessValue
boolean	score4BetweenSelected
double	score4BetweenValue1
double	score4BetweenValue2
boolean	score4GreaterSelected
double	score4GreaterValue
boolean	score4LessSelected
double	score4LessValue
boolean	score5BetweenSelected
double	score5BetweenValue1
double	score5BetweenValue2
boolean	score5GreaterSelected
double	score5GreaterValue
boolean	score5LessSelected
double	score5LessValue
boolean	score6BetweenSelected
double	score6BetweenValue1
double	score6BetweenValue2
boolean	score6GreaterSelected
double	score6GreaterValue
boolean	score6LessSelected
double	score6LessValue
boolean	SexHalfSwitch

Constructor Summary

SNPQualityFilter()
Creates a new instance of SNPFilter

Method Summary

boolean	FilterLociFunction(LociFunction thisloci)
boolean	FilterLociFunctionSubjectInf(LociFunctionSubjectInf thisinf, byte bytechr)
boolean	isOn()
void	Reset()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

score1GreaterSelected

public boolean score1GreaterSelected

score1GreaterValue

public double score1GreaterValue

score1LessSelected

public boolean score1LessSelected

score1LessValue

public double score1LessValue

score1BetweenSelected

public boolean score1BetweenSelected

score1BetweenValue1

public double score1BetweenValue1

score1BetweenValue2

public double score1BetweenValue2

score2GreaterSelected

public boolean score2GreaterSelected

score2GreaterValue

public double score2GreaterValue

score2LessSelected

public boolean score2LessSelected

score2LessValue

public double score2LessValue

score2BetweenSelected

public boolean score2BetweenSelected

score2BetweenValue1

public double score2BetweenValue1

score2BetweenValue2

public double score2BetweenValue2

score3GreaterSelected

public boolean score3GreaterSelected

score3GreaterValue

public double score3GreaterValue

score3LessSelected

public boolean score3LessSelected

score3LessValue

public double score3LessValue

score3BetweenSelected

public boolean score3BetweenSelected

score3BetweenValue1

public double score3BetweenValue1

score3BetweenValue2

public double score3BetweenValue2

score4GreaterSelected

public boolean score4GreaterSelected

score4GreaterValue

public double score4GreaterValue

score4LessSelected

public boolean score4LessSelected

score4LessValue

public double score4LessValue

score4BetweenSelected

public boolean score4BetweenSelected

score4BetweenValue1

public double score4BetweenValue1

score4BetweenValue2

public double score4BetweenValue2

score5GreaterSelected

public boolean score5GreaterSelected

score5GreaterValue

public double score5GreaterValue

score5LessSelected

public boolean score5LessSelected

score5LessValue

public double score5LessValue

score5BetweenSelected

public boolean score5BetweenSelected

score5BetweenValue1

public double score5BetweenValue1

score5BetweenValue2

public double score5BetweenValue2

score6GreaterSelected

public boolean score6GreaterSelected

score6GreaterValue

public double score6GreaterValue

score6LessSelected

public boolean score6LessSelected

score6LessValue

public double score6LessValue

score6BetweenSelected

public boolean score6BetweenSelected

score6BetweenValue1

public double score6BetweenValue1

score6BetweenValue2

public double score6BetweenValue2

SexHalfSwitch

public boolean SexHalfSwitch

Constructor Detail

SNPQualityFilter

public SNPQualityFilter()

Creates a new instance of SNPFilter

Method Detail

Reset

public void Reset()

isOn

public boolean isOn()

FilterLociFunction

public boolean FilterLociFunction(LociFunction thisloci)

FilterLociFunctionSubjectInf

public boolean FilterLociFunctionSubjectInf(LociFunctionSubjectInf thisinf,
                                            byte bytechr)