genomicsnpanalyzer
Class SNPQualityFilter

java.lang.Object
  extended by genomicsnpanalyzer.SNPQualityFilter

public class SNPQualityFilter
extends java.lang.Object


Field Summary
 boolean score1BetweenSelected
           
 double score1BetweenValue1
           
 double score1BetweenValue2
           
 boolean score1GreaterSelected
           
 double score1GreaterValue
           
 boolean score1LessSelected
           
 double score1LessValue
           
 boolean score2BetweenSelected
           
 double score2BetweenValue1
           
 double score2BetweenValue2
           
 boolean score2GreaterSelected
           
 double score2GreaterValue
           
 boolean score2LessSelected
           
 double score2LessValue
           
 boolean score3BetweenSelected
           
 double score3BetweenValue1
           
 double score3BetweenValue2
           
 boolean score3GreaterSelected
           
 double score3GreaterValue
           
 boolean score3LessSelected
           
 double score3LessValue
           
 boolean score4BetweenSelected
           
 double score4BetweenValue1
           
 double score4BetweenValue2
           
 boolean score4GreaterSelected
           
 double score4GreaterValue
           
 boolean score4LessSelected
           
 double score4LessValue
           
 boolean score5BetweenSelected
           
 double score5BetweenValue1
           
 double score5BetweenValue2
           
 boolean score5GreaterSelected
           
 double score5GreaterValue
           
 boolean score5LessSelected
           
 double score5LessValue
           
 boolean score6BetweenSelected
           
 double score6BetweenValue1
           
 double score6BetweenValue2
           
 boolean score6GreaterSelected
           
 double score6GreaterValue
           
 boolean score6LessSelected
           
 double score6LessValue
           
 boolean SexHalfSwitch
           
 
Constructor Summary
SNPQualityFilter()
          Creates a new instance of SNPFilter
 
Method Summary
 boolean FilterLociFunction(LociFunction thisloci)
           
 boolean FilterLociFunctionSubjectInf(LociFunctionSubjectInf thisinf, byte bytechr)
           
 boolean isOn()
           
 void Reset()
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Field Detail

score1GreaterSelected

public boolean score1GreaterSelected

score1GreaterValue

public double score1GreaterValue

score1LessSelected

public boolean score1LessSelected

score1LessValue

public double score1LessValue

score1BetweenSelected

public boolean score1BetweenSelected

score1BetweenValue1

public double score1BetweenValue1

score1BetweenValue2

public double score1BetweenValue2

score2GreaterSelected

public boolean score2GreaterSelected

score2GreaterValue

public double score2GreaterValue

score2LessSelected

public boolean score2LessSelected

score2LessValue

public double score2LessValue

score2BetweenSelected

public boolean score2BetweenSelected

score2BetweenValue1

public double score2BetweenValue1

score2BetweenValue2

public double score2BetweenValue2

score3GreaterSelected

public boolean score3GreaterSelected

score3GreaterValue

public double score3GreaterValue

score3LessSelected

public boolean score3LessSelected

score3LessValue

public double score3LessValue

score3BetweenSelected

public boolean score3BetweenSelected

score3BetweenValue1

public double score3BetweenValue1

score3BetweenValue2

public double score3BetweenValue2

score4GreaterSelected

public boolean score4GreaterSelected

score4GreaterValue

public double score4GreaterValue

score4LessSelected

public boolean score4LessSelected

score4LessValue

public double score4LessValue

score4BetweenSelected

public boolean score4BetweenSelected

score4BetweenValue1

public double score4BetweenValue1

score4BetweenValue2

public double score4BetweenValue2

score5GreaterSelected

public boolean score5GreaterSelected

score5GreaterValue

public double score5GreaterValue

score5LessSelected

public boolean score5LessSelected

score5LessValue

public double score5LessValue

score5BetweenSelected

public boolean score5BetweenSelected

score5BetweenValue1

public double score5BetweenValue1

score5BetweenValue2

public double score5BetweenValue2

score6GreaterSelected

public boolean score6GreaterSelected

score6GreaterValue

public double score6GreaterValue

score6LessSelected

public boolean score6LessSelected

score6LessValue

public double score6LessValue

score6BetweenSelected

public boolean score6BetweenSelected

score6BetweenValue1

public double score6BetweenValue1

score6BetweenValue2

public double score6BetweenValue2

SexHalfSwitch

public boolean SexHalfSwitch
Constructor Detail

SNPQualityFilter

public SNPQualityFilter()
Creates a new instance of SNPFilter

Method Detail

Reset

public void Reset()

isOn

public boolean isOn()

FilterLociFunction

public boolean FilterLociFunction(LociFunction thisloci)

FilterLociFunctionSubjectInf

public boolean FilterLociFunctionSubjectInf(LociFunctionSubjectInf thisinf,
                                            byte bytechr)